PDB Entry (6vwe)
PDB ID: 6vwe Resolution: 2.5 Å Exp. Method: X-RAY DIFFRACTION
PMID: - DOI: 10.1021/acs.organomet.9b00843
Protein
Protein Name: Transcriptional regulator, PadR-like family
Uniprot ID/ACC: A2RI36 (A2RI36_LACLM) Organism: Lactococcus lactis subsp. cremoris (strain MG1363)
Gene Symbol: llmg_0323 Gene ID: -
Protein Class: TRANSCRIPTION REGULATOR
Ligand
Ligand Name:   bis[diethyl(methyl)-lambda~5~-phosphanyl]{bis[{[(2-{[2-(2,5-dioxopyrrol-1-yl)ethyl]amino}-2-oxoethyl)amino]methyl}(diethyl)-lambda~5~-phosphanyl]}rhodium
Canonical SMILES:   CC[P](C)(CC)[Rh]([P](C)(CC)CC)([P](CC)(CC)CNCC(=O)NCCN1C(=O)C=CC1=O)[P](CC)(CC)CNCC(=O)NCCN2C(=O)C=CC2=O
Standard InChI:   InChI=1S/2C13H22N3O3P.2C5H13P.Rh/c2*1-3-20(4-2)10-14-9-11(17)15-7-8-16-12(18)5-6-13(16)19;2*1-4-6(3)5-2;/h2*5-6,14H,3-4,7-10H2,1-2H3,(H,15,17);2*4-5H2,1-3H3;
HET Code:   JY1 PubChem:   -
DrugBank:   - ChEMBL:   -
Molecular Formula:   C36H70N6O6P4Rh Mol. Weight:   909.33624 logP:   4.4661
HBD:   4 HBA:   8
#Rotatable Bonds:   26 TPSA:   157.02
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Michael Addition CYS 89 A 40.13 - Vinyl Carbonyl
Binding Affinity
-