PDB Entry (4y7y)
PDB ID: 4y7y Resolution: 2.4 Å Exp. Method: X-RAY DIFFRACTION
PMID: 26020686 DOI: 10.1021/jacs.5b03688
Protein
Protein Name: Proteasome subunit beta type-2
Uniprot ID/ACC: P25043 (PSB2_YEAST) Organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Gene Symbol: PUP1 Gene ID: 854328
Protein Class: HYDROLASE
Ligand
Ligand Name:   Ac-LAA-ep
Canonical SMILES:   O=C(C)N[C@@H](CC(C)C)C(=O)N[C@@H](C)C(=O)N[C@@H](C)C(=O)[C@@]1(C)OC1
Standard InChI:   InChI=1S/C17H29N3O5/c1-9(2)7-13(20-12(5)21)16(24)19-11(4)15(23)18-10(3)14(22)17(6)8-25-17/h9-11,13H,7-8H2,1-6H3,(H,18,23)(H,19,24)(H,20,21)/t10-,11-,13-,17-/m0/s1
HET Code:   2A1 PubChem:   -
DrugBank:   - ChEMBL:   -
Molecular Formula:   C17H29N3O5 Mol. Weight:   355.21072 logP:   -0.0954
HBD:   3 HBA:   5
#Rotatable Bonds:   9 TPSA:   116.9
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Cyclohemiaminoacetalization THR 1 A 68.32 - Epoxide
Binding Affinity
-