PDB Entry (6n80)
PDB ID: 6n80 Resolution: 1.96 Å Exp. Method: X-RAY DIFFRACTION
PMID: 31187989 DOI: 10.1021/acs.jmedchem.9b00878
Protein
Protein Name: ATP-dependent Clp protease proteolytic subunit
Uniprot ID/ACC: Q2G036 (CLPP_STAA8) Organism: Staphylococcus aureus (strain NCTC 8325 / PS 47)
Gene Symbol: clpP Gene ID: 3919354
Protein Class: HYDROLASE
Ligand
Ligand Name:   N-[(1R)-1-borono-3-methylbutyl]-N~2~-(2-chloro-4-methoxybenzene-1-carbonyl)-L-leucinamide
Canonical SMILES:   CC(C)C[C@@H](B(O)O)NC(=O)[C@H](CC(C)C)NC(=O)c1ccc(cc1Cl)OC
Standard InChI:   InChI=1S/C19H30BClN2O5/c1-11(2)8-16(19(25)23-17(20(26)27)9-12(3)4)22-18(24)14-7-6-13(28-5)10-15(14)21/h6-7,10-12,16-17,26-27H,8-9H2,1-5H3,(H,22,24)(H,23,25)/t16-,17-/m0/s1
HET Code:   JT7 PubChem:   138753287
DrugBank:   - ChEMBL:   CHEMBL4566080
Molecular Formula:   C19H30BClN2O5 Mol. Weight:   412.19363 logP:   2.036
HBD:   4 HBA:   5
#Rotatable Bonds:   10 TPSA:   107.89
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Borylation SER 98 S 28.92 - Boronic Acid
Binding Affinity
-