PDB Entry (6r1v)
PDB ID: 6r1v Resolution: - Exp. Method: SOLUTION NMR
PMID: 31724850 DOI: 10.1021/acsinfecdis.9b00265
Protein
Protein Name: Sortase A
Uniprot ID/ACC: Q2FV99 (SRTA_STAA8) Organism: Staphylococcus aureus (strain NCTC 8325 / PS 47)
Gene Symbol: srtA Gene ID: 3921273
Protein Class: HYDROLASE
Ligand
Ligand Name:   3-hydroxy-6-(hydroxymethyl)-2-{[(pyridin-2-yl)amino](thiophen-3-yl)methyl}-4H-pyran-4-one
Canonical SMILES:   OCc1cc(=O)c(O)c(o1)[C@@H](c2ccsc2)Nc3ncccc3
Standard InChI:   InChI=1S/C16H14N2O4S/c19-8-11-7-12(20)15(21)16(22-11)14(10-4-6-23-9-10)18-13-3-1-2-5-17-13/h1-7,9,14,19,21H,8H2,(H,17,18)/t14-/m1/s1
HET Code:   JPT PubChem:   1382557
DrugBank:   - ChEMBL:   -
Molecular Formula:   C16H14N2O4S Mol. Weight:   330.0674 logP:   2.4957
HBD:   3 HBA:   7
#Rotatable Bonds:   5 TPSA:   95.59
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Nucleophilic Aliphatic Subsititution CYS 126 A 26.66 12.91 Mannich Base
Binding Affinity
-