PDB Entry (6r0r)
PDB ID: 6r0r Resolution: 1.45 Å Exp. Method: X-RAY DIFFRACTION
PMID: 32879358 DOI: 10.1038/s41598-020-70870-w
Protein
Protein Name: Polyprotein P1234
Uniprot ID/ACC: Q5Y389 (POLN_GETV) Organism: Getah virus (GETV)
Gene Symbol: - Gene ID: 5075854
Protein Class: HYDROLASE
Ligand
Ligand Name:   ADP-ribose
Canonical SMILES:   Nc1ncnc2n(cnc12)[C@@H]1O[C@H](COP(O)(=O)OP(O)(=O)OC[C@@H](O)[C@@H](O)[C@@H](O)C=O)[C@@H](O)[C@H]1O
Standard InChI:   InChI=1S/C15H23N5O14P2/c16-13-9-14(18-4-17-13)20(5-19-9)15-12(26)11(25)8(33-15)3-32-36(29,30)34-35(27,28)31-2-7(23)10(24)6(22)1-21/h1,4-8,10-12,15,22-26H,2-3H2,(H,27,28)(H,29,30)(H2,16,17,18)/t6-,7+,8+,10-,11+,12+,15+/m0/s1
HET Code:   JNT PubChem:   30243
DrugBank:   - ChEMBL:   -
Molecular Formula:   C15H23N5O14P2 Mol. Weight:   559.07166 logP:   -3.4401
HBD:   8 HBA:   17
#Rotatable Bonds:   12 TPSA:   299.36
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Hemi(thio)acetalization CYS 34 A 5.1 10.87 Aldehyde
Binding Affinity
-