PDB Entry (6eej) |
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PDB ID: 6eej | Resolution: 1.89 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 31524380 | DOI: 10.1021/acs.biochem.9b00652 | |
Protein |
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Protein Name: Acetoacetate decarboxylase | |
Uniprot ID/ACC: D7C0E5 (D7C0E5_STRBB) | Organism: Streptomyces bingchenggensis (strain BCW-1) |
Gene Symbol: SBI_00515 | Gene ID: - |
Protein Class: LYASE |
Ligand |
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Ligand Name: (3E,5E)-6-(4-nitrophenyl)-2-oxohexa-3,5-dienoic acid | ||
Canonical SMILES: OC(=O)C(=O)\C=C\C=C\c1ccc(cc1)[N+]([O-])=O | ||
Standard InChI: InChI=1S/C12H9NO5/c14-11(12(15)16)4-2-1-3-9-5-7-10(8-6-9)13(17)18/h1-8H,(H,15,16)/b3-1+,4-2+ | ||
HET Code: J6S | PubChem: 138857406 | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C12H9NO5 | Mol. Weight: 247.04807 | logP: 1.8179 |
HBD: 1 | HBA: 4 | |
#Rotatable Bonds: 5 | TPSA: 97.51 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Imine Condensation | LYS 122 | A | 5.38 | 6.93 | Ketone |
Binding Affinity |
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