PDB Entry (4ncr)
PDB ID: 4ncr Resolution: 1.88 Å Exp. Method: X-RAY DIFFRACTION
PMID: 24500695 DOI: 10.1002/emmm.201303575
Protein
Protein Name: Decaprenylphosphoryl-beta-D-ribose oxidase
Uniprot ID/ACC: P9WJF1 (DPRE1_MYCTU) Organism: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Gene Symbol: dprE1 Gene ID: 886125
Protein Class: OXIDOREDUCTASE
Ligand
Ligand Name:   PBTZ169
Canonical SMILES:   [O-][N+](=O)c1cc(cc2c1sc(nc2=O)N1CCN(CC2CCCCC2)CC1)C(F)(F)F
Standard InChI:   InChI=1S/C20H23F3N4O3S/c21-20(22,23)14-10-15-17(16(11-14)27(29)30)31-19(24-18(15)28)26-8-6-25(7-9-26)12-13-4-2-1-3-5-13/h10-11,13H,1-9,12H2
HET Code:   26J PubChem:   57331386
DrugBank:   DB14821 ChEMBL:   CHEMBL3330226
Molecular Formula:   C20H23F3N4O3S Mol. Weight:   456.1443 logP:   4.2858
HBD:   0 HBA:   7
#Rotatable Bonds:   4 TPSA:   79.58
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Nucleophilic Addition to a Double Bond CYS 387 A 24.77 11.83 Nitroarene
Binding Affinity
-