PDB Entry (5g0m)
PDB ID: 5g0m Resolution: 1.8 Å Exp. Method: X-RAY DIFFRACTION
PMID: - DOI: -
Protein
Protein Name: Uncharacterized protein
Uniprot ID/ACC: C1F2K5 (C1F2K5_ACIC5) Organism: Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670 / NBRC 15755 / NCIMB 13165 / 161)
Gene Symbol: ACP_2665 Gene ID: -
Protein Class: HYDROLASE
Ligand
Ligand Name:   (1R,2S,3R,4S,5S,6R)-7-(8-azidooctanoyl)-3,4,5-trihydroxy-7-azabicyclo[4.1.0]heptane-2-carboxylic acid
Canonical SMILES:   O[C@H]1[C@H]2[C@@H]([C@@H]([C@@H](O)[C@@H]1O)C(O)=O)N2C(=O)CCCCCCCN=[N+]=[N-]
Standard InChI:   InChI=1S/C15H24N4O6/c16-18-17-7-5-3-1-2-4-6-8(20)19-10-9(15(24)25)12(21)14(23)13(22)11(10)19/h9-14,21-23H,1-7H2,(H,24,25)/t9-,10+,11+,12+,13-,14-,19?/m0/s1
HET Code:   J13 PubChem:   -
DrugBank:   - ChEMBL:   -
Molecular Formula:   C15H24N4O6 Mol. Weight:   356.1696 logP:   0.0138
HBD:   4 HBA:   6
#Rotatable Bonds:   9 TPSA:   166.83
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Aziridine Opening GLU 287 A 14.93 9.7 Aziridine
Binding Affinity
-