PDB Entry (1o4d) |
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PDB ID: 1o4d | Resolution: 1.85 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 14613321 | DOI: 10.1021/jm020970s | |
Protein |
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Protein Name: Proto-oncogene tyrosine-protein kinase Src | |
Uniprot ID/ACC: P12931 (SRC_HUMAN) | Organism: Homo sapiens (Human) |
Gene Symbol: SRC | Gene ID: 6714 |
Protein Class: SIGNALING PROTEIN |
Ligand |
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Ligand Name: RU78262 | ||
Canonical SMILES: OP(O)(=O)Oc1ccccc1C=O | ||
Standard InChI: InChI=1S/C7H7O5P/c8-5-6-3-1-2-4-7(6)12-13(9,10)11/h1-5H,(H2,9,10,11) | ||
HET Code: 262 | PubChem: 5287463 | |
DrugBank: DB01947 | ChEMBL: CHEMBL286678 | |
Molecular Formula: C7H7O5P | Mol. Weight: 202.00311 | logP: 0.9706 |
HBD: 2 | HBA: 3 | |
#Rotatable Bonds: 3 | TPSA: 83.83 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Hemi(thio)acetalization | CYS 44 | A | 9.38 | 12.51 | Aldehyde |
Binding Affinity |
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Database Name | Value |
PDBBind | IC50 : 300000 nM |
BindingDB | IC50 : 80000-300000 nM , IC50 : 80000 nM , IC50 : 300000 nM , IC50 : 200000 nM |