PDB Entry (4lv3)
PDB ID: 4lv3 Resolution: 1.42 Å Exp. Method: X-RAY DIFFRACTION
PMID: 25344815 DOI: 10.1038/nchembio.1666
Protein
Protein Name: Beta-lactamase
Uniprot ID/ACC: P00811 (AMPC_ECOLI) Organism: Escherichia coli (strain K12)
Gene Symbol: ampC Gene ID: 948669
Protein Class: HYDROLASE
Ligand
Ligand Name:   (3,5-di-tert-butylphenyl)boronic acid
Canonical SMILES:   OB(O)c1cc(C(C)(C)C)cc(c1)C(C)(C)C
Standard InChI:   InChI=1S/C14H23BO2/c1-13(2,3)10-7-11(14(4,5)6)9-12(8-10)15(16)17/h7-9,16-17H,1-6H3
HET Code:   25N PubChem:   11470330
DrugBank:   - ChEMBL:   -
Molecular Formula:   C14H23BO2 Mol. Weight:   234.17911 logP:   1.9614
HBD:   2 HBA:   2
#Rotatable Bonds:   1 TPSA:   40.46
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Borylation SER 64 A 13.74 - Boronic Acid
Binding Affinity
Database Name Value
PDBBind Ki : 3200 nM