PDB Entry (6af9)
PDB ID: 6af9 Resolution: 1.39 Å Exp. Method: X-RAY DIFFRACTION
PMID: 30063823 DOI: 10.1021/acschembio.8b00701
Protein
Protein Name: Parkinson disease protein 7
Uniprot ID/ACC: Q99497 (PARK7_HUMAN) Organism: Homo sapiens (Human)
Gene Symbol: PARK7 Gene ID: 11315
Protein Class: HYDROLASE
Ligand
Ligand Name:   Isatin
Canonical SMILES:   c1cccc(c12)NC(=O)C2=O
Standard InChI:   InChI=1S/C8H5NO2/c10-7-5-3-1-2-4-6(5)9-8(7)11/h1-4H,(H,9,10,11)
HET Code:   ISN PubChem:   7054
DrugBank:   DB02095 ChEMBL:   CHEMBL326294
Molecular Formula:   C8H5NO2 Mol. Weight:   147.03203 logP:   0.8214
HBD:   1 HBA:   2
#Rotatable Bonds:   0 TPSA:   46.17
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Hemi(thio)acetalization CYS 106 A 13.77 15.38 Ketone
Binding Affinity
Database Name Value
PDBBind Kd : 3200 nM