PDB Entry (5g0q) |
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PDB ID: 5g0q | Resolution: 1.65 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 28581485 | DOI: 10.1038/nchembio.2395 | |
Protein |
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Protein Name: Uncharacterized protein | |
Uniprot ID/ACC: C1F2K5 (C1F2K5_ACIC5) | Organism: Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670 / NBRC 15755 / NCIMB 13165 / 161) |
Gene Symbol: ACP_2665 | Gene ID: - |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: (1R,2S,3R,4S,5S,6R)-7-(8-azidooctyl)-3,4,5-trihydroxy-7-azabicyclo[4.1.0]heptane-2-carboxylic acid | ||
Canonical SMILES: O[C@H]1[C@H]2[C@@H]([C@@H]([C@@H](O)[C@@H]1O)C(O)=O)N2CCCCCCCCN=[N+]=[N-] | ||
Standard InChI: InChI=1S/C15H26N4O5/c16-18-17-7-5-3-1-2-4-6-8-19-10-9(15(23)24)12(20)14(22)13(21)11(10)19/h9-14,20-22H,1-8H2,(H,23,24)/t9-,10+,11+,12+,13-,14-,19?/m0/s1 | ||
HET Code: IF6 | PubChem: 126961875 | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C15H26N4O5 | Mol. Weight: 342.1903 | logP: 0.4872 |
HBD: 4 | HBA: 6 | |
#Rotatable Bonds: 10 | TPSA: 149.76 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Aziridine Opening | GLU 287 | A | 14.06 | 6.35 | Aziridine |
Binding Affinity |
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Database Name | Value |
PDBBind | IC50 : 0.1 nM |