PDB Entry (5g0q)
PDB ID: 5g0q Resolution: 1.65 Å Exp. Method: X-RAY DIFFRACTION
PMID: 28581485 DOI: 10.1038/nchembio.2395
Protein
Protein Name: Uncharacterized protein
Uniprot ID/ACC: C1F2K5 (C1F2K5_ACIC5) Organism: Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670 / NBRC 15755 / NCIMB 13165 / 161)
Gene Symbol: ACP_2665 Gene ID: -
Protein Class: HYDROLASE
Ligand
Ligand Name:   (1R,2S,3R,4S,5S,6R)-7-(8-azidooctyl)-3,4,5-trihydroxy-7-azabicyclo[4.1.0]heptane-2-carboxylic acid
Canonical SMILES:   O[C@H]1[C@H]2[C@@H]([C@@H]([C@@H](O)[C@@H]1O)C(O)=O)N2CCCCCCCCN=[N+]=[N-]
Standard InChI:   InChI=1S/C15H26N4O5/c16-18-17-7-5-3-1-2-4-6-8-19-10-9(15(23)24)12(20)14(22)13(21)11(10)19/h9-14,20-22H,1-8H2,(H,23,24)/t9-,10+,11+,12+,13-,14-,19?/m0/s1
HET Code:   IF6 PubChem:   126961875
DrugBank:   - ChEMBL:   -
Molecular Formula:   C15H26N4O5 Mol. Weight:   342.1903 logP:   0.4872
HBD:   4 HBA:   6
#Rotatable Bonds:   10 TPSA:   149.76
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Aziridine Opening GLU 287 A 14.06 6.35 Aziridine
Binding Affinity
Database Name Value
PDBBind IC50 : 0.1 nM