PDB Entry (3c9w)
PDB ID: 3c9w Resolution: 2.5 Å Exp. Method: X-RAY DIFFRACTION
PMID: 18571434 DOI: 10.1016/j.jsb.2008.05.002
Protein
Protein Name: Mitogen-activated protein kinase 1
Uniprot ID/ACC: P63086 (MK01_RAT) Organism: Rattus norvegicus (Rat)
Gene Symbol: Mapk1 Gene ID: 116590
Protein Class: TRANSFERASE
Ligand
Ligand Name:   hypothemycin
Canonical SMILES:   Oc1cc(OC)cc(c12)[C@@H]3[C@H](O3)C[C@H](O)[C@H](O)C(=O)/C=C\C[C@H](C)OC2=O
Standard InChI:   InChI=1S/C19H22O8/c1-9-4-3-5-12(20)17(23)14(22)8-15-18(27-15)11-6-10(25-2)7-13(21)16(11)19(24)26-9/h3,5-7,9,14-15,17-18,21-23H,4,8H2,1-2H3/b5-3-/t9-,14-,15+,17+,18+/m0/s1
HET Code:   HMY PubChem:   9929643
DrugBank:   DB07905 ChEMBL:   CHEMBL471474
Molecular Formula:   C19H22O8 Mol. Weight:   378.13147 logP:   1.0269
HBD:   3 HBA:   8
#Rotatable Bonds:   1 TPSA:   125.82
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Michael Addition CYS 164 A 17.15 14.47 Vinyl Carbonyl
Binding Affinity
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