PDB Entry (6q6k)
PDB ID: 6q6k Resolution: 1.92 Å Exp. Method: X-RAY DIFFRACTION
PMID: 30811188 DOI: 10.1021/jacs.9b00056
Protein
Protein Name: Lysosomal acid glucosylceramidase
Uniprot ID/ACC: P04062 (GLCM_HUMAN) Organism: Homo sapiens (Human)
Gene Symbol: GBA Gene ID: 2629
Protein Class: HYDROLASE
Ligand
Ligand Name:   ME569
Canonical SMILES:   c1cccc(c12)C(C)(C)C(\N2C)=C/C=C/C=C/C(C3(C)C)=[N+](c(c34)cccc4)CCCCCC(=O)NCc5cn(nn5)C[C@@H]([C@@H](O6)[C@@H]67)[C@@H](O)[C@H](O)[C@H]7O
Standard InChI:   InChI=1S/C42H52N6O5/c1-41(2)29-16-11-13-18-31(29)46(5)33(41)20-8-6-9-21-34-42(3,4)30-17-12-14-19-32(30)48(34)23-15-7-10-22-35(49)43-24-27-25-47(45-44-27)26-28-36(50)37(51)38(52)40-39(28)53-40/h6,8-9,11-14,16-21,25,28,36-40,50-52H,7,10,15,22-24,26H2,1-5H3/p+1/t28-,36-,37+,38-,39-,40+/m1/s1
HET Code:   HKW PubChem:   -
DrugBank:   - ChEMBL:   -
Molecular Formula:   C42H53N6O5+ Mol. Weight:   721.40717 logP:   4.4349
HBD:   4 HBA:   9
#Rotatable Bonds:   13 TPSA:   139.28
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Epoxide Opening GLU 340 A 20.98 9.3 Epoxide
Binding Affinity
-