PDB Entry (6q6n)
PDB ID: 6q6n Resolution: 1.63 Å Exp. Method: X-RAY DIFFRACTION
PMID: 30811188 DOI: 10.1021/jacs.9b00056
Protein
Protein Name: Lysosomal acid glucosylceramidase
Uniprot ID/ACC: P04062 (GLCM_HUMAN) Organism: Homo sapiens (Human)
Gene Symbol: GBA Gene ID: 2629
Protein Class: HYDROLASE
Ligand
Ligand Name:   ME655
Canonical SMILES:   [C@H]12[C@@H](O2)[C@H](O)[C@@H](O)[C@H](O)[C@H]1Cn3cc(nn3)CCCOc4ccc(cc4)-c5ccccc5
Standard InChI:   InChI=1S/C24H27N3O5/c28-20-19(23-24(32-23)22(30)21(20)29)14-27-13-17(25-26-27)7-4-12-31-18-10-8-16(9-11-18)15-5-2-1-3-6-15/h1-3,5-6,8-11,13,19-24,28-30H,4,7,12,14H2/t19-,20-,21+,22-,23-,24+/m1/s1
HET Code:   HK2 PubChem:   -
DrugBank:   - ChEMBL:   -
Molecular Formula:   C24H27N3O5 Mol. Weight:   437.19507 logP:   1.4366
HBD:   3 HBA:   8
#Rotatable Bonds:   8 TPSA:   113.16
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Epoxide Opening GLU 340 A 17.04 9.4 Epoxide
Binding Affinity
-