PDB Entry (3beb)
PDB ID: 3beb Resolution: 2.0 Å Exp. Method: X-RAY DIFFRACTION
PMID: 18602645 DOI: 10.1016/j.jmb.2008.06.012
Protein
Protein Name: D-alanyl-D-alanine carboxypeptidase DacA
Uniprot ID/ACC: P0AEB2 (DACA_ECOLI) Organism: Escherichia coli (strain K12)
Gene Symbol: dacA Gene ID: 58462995
Protein Class: HYDROLASE
Ligand
Ligand Name:   (2S,5R,6R)-6-[(6S)-6-amino-6-carboxyhexanamido]-3,3-dimethyl-7-oxo-4-thia-1-azabicyclo[3.2.0]heptane-2-carboxylic acid
Canonical SMILES:   CC1(C)S[C@@H]2[C@H](NC(=O)CCCC[C@H](N)C(O)=O)C(=O)N2[C@H]1C([O-])=O
Standard InChI:   InChI=1S/C15H23N3O6S/c1-15(2)10(14(23)24)18-11(20)9(12(18)25-15)17-8(19)6-4-3-5-7(16)13(21)22/h7,9-10,12H,3-6,16H2,1-2H3,(H,17,19)(H,21,22)(H,23,24)/p-1/t7-,9+,10-,12+/m0/s1
HET Code:   HJ3 PubChem:   -
DrugBank:   - ChEMBL:   -
Molecular Formula:   C15H22N3O6S- Mol. Weight:   372.12347 logP:   -1.7443
HBD:   3 HBA:   7
#Rotatable Bonds:   8 TPSA:   152.86
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Beta-Lactam Addition SER 44 A 28.36 - Beta-Lactam
Binding Affinity
-