PDB Entry (4oe7)
PDB ID: 4oe7 Resolution: 1.99 Å Exp. Method: X-RAY DIFFRACTION
PMID: - DOI: -
Protein
Protein Name: Putative 2-dehydro-3-deoxy-D-gluconate aldolase YagE
Uniprot ID/ACC: P75682 (YAGE_ECOLI) Organism: Escherichia coli (strain K12)
Gene Symbol: yagE Gene ID: 944925
Protein Class: LYASE
Ligand
Ligand Name:   (4R)-4-hydroxy-2,5-dioxopentanoic acid
Canonical SMILES:   O[C@H](CC(=O)C(O)=O)C=O
Standard InChI:   InChI=1S/C5H6O5/c6-2-3(7)1-4(8)5(9)10/h2-3,7H,1H2,(H,9,10)/t3-/m1/s1
HET Code:   GXS PubChem:   118534805
DrugBank:   - ChEMBL:   -
Molecular Formula:   C5H6O5 Mol. Weight:   146.02153 logP:   -1.41
HBD:   2 HBA:   4
#Rotatable Bonds:   4 TPSA:   91.67
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Imine Condensation LYS 174 D 8.69 - Ketone
Binding Affinity
-