PDB Entry (4oe7) |
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PDB ID: 4oe7 | Resolution: 1.99 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: - | DOI: - | |
Protein |
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Protein Name: Putative 2-dehydro-3-deoxy-D-gluconate aldolase YagE | |
Uniprot ID/ACC: P75682 (YAGE_ECOLI) | Organism: Escherichia coli (strain K12) |
Gene Symbol: yagE | Gene ID: 944925 |
Protein Class: LYASE |
Ligand |
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Ligand Name: (4S)-4-hydroxy-2,5-dioxopentanoic acid | ||
Canonical SMILES: O[C@@H](CC(=O)C(O)=O)C=O | ||
Standard InChI: InChI=1S/C5H6O5/c6-2-3(7)1-4(8)5(9)10/h2-3,7H,1H2,(H,9,10)/t3-/m0/s1 | ||
HET Code: GXP | PubChem: 118534747 | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C5H6O5 | Mol. Weight: 146.02153 | logP: -1.41 |
HBD: 2 | HBA: 4 | |
#Rotatable Bonds: 4 | TPSA: 91.67 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Imine Condensation | LYS 174 | D | 8.69 | - | Ketone |
Binding Affinity |
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