PDB Entry (5mqy) |
||
| ||
PDB ID: 5mqy | Resolution: 1.13 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 28287264 | DOI: 10.1021/acs.jmedchem.6b01881 | |
Protein |
|
Protein Name: Procathepsin L | |
Uniprot ID/ACC: P07711 (CATL1_HUMAN) | Organism: Homo sapiens (Human) |
Gene Symbol: CTSL | Gene ID: 1514 |
Protein Class: HYDROLASE |
Ligand |
||
Ligand Name: 4-[1,3-benzodioxol-5-ylmethyl(2-phenoxyethyl)amino]-5-fluoropyrimidine-2-carbonitrile | ||
Canonical SMILES: O1COc(c12)cc(cc2)CN(c3c(F)cnc(n3)C#N)CCOc4ccccc4 | ||
Standard InChI: InChI=1S/C21H17FN4O3/c22-17-12-24-20(11-23)25-21(17)26(8-9-27-16-4-2-1-3-5-16)13-15-6-7-18-19(10-15)29-14-28-18/h1-7,10,12H,8-9,13-14H2 | ||
HET Code: GH4 | PubChem: 137653100 | |
DrugBank: - | ChEMBL: CHEMBL4094982 | |
Molecular Formula: C21H17FN4O3 | Mol. Weight: 392.12848 | logP: 3.30168 |
HBD: 0 | HBA: 7 | |
#Rotatable Bonds: 7 | TPSA: 80.5 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Nucleophilic Addition to a Triple Bond | CYS 25 | A | 17.48 | 13.09 | Nitrile |
Binding Affinity |
|
Database Name | Value |
PDBBind | Ki : 77 nM |