PDB Entry (2pbk)
PDB ID: 2pbk Resolution: 1.73 Å Exp. Method: X-RAY DIFFRACTION
PMID: 17870089 DOI: 10.1016/j.jmb.2007.07.073
Protein
Protein Name: Polyprotein
Uniprot ID/ACC: O36607 (O36607_HHV8) Organism: Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus)
Gene Symbol: - Gene ID: -
Protein Class: HYDROLASE
Ligand
Ligand Name:   1-acetyl-L-prolyl-L-valyl-L-tyrosyl-3-methyl-L-valyl-N~1~-[(1R)-1-phosphonoethyl]-L-glutamamide
Canonical SMILES:   CC(=O)N1CCC[C@H]1C(=O)N[C@@H](C(C)C)C(=O)N[C@@H](Cc2ccc(O)cc2)C(=O)N[C@@H](C(C)(C)C)C(=O)N[C@@H](CCC(=O)N)C(=O)N[C@@H](C)P(=O)(Oc3ccccc3)Oc4ccccc4
Standard InChI:   InChI=1S/C46H62N7O11P/c1-28(2)39(51-43(59)37-19-14-26-53(37)30(4)54)44(60)50-36(27-31-20-22-32(55)23-21-31)42(58)52-40(46(5,6)7)45(61)49-35(24-25-38(47)56)41(57)48-29(3)65(62,63-33-15-10-8-11-16-33)64-34-17-12-9-13-18-34/h8-13,15-18,20-23,28-29,35-37,39-40,55H,14,19,24-27H2,1-7H3,(H2,47,56)(H,48,57)(H,49,61)(H,50,60)(H,51,59)(H,52,58)/t29-,35+,36+,37+,39+,40-/m1/s1
HET Code:   GG7 PubChem:   -
DrugBank:   - ChEMBL:   -
Molecular Formula:   C46H62N7O11P Mol. Weight:   919.4245 logP:   3.6657
HBD:   7 HBA:   11
#Rotatable Bonds:   21 TPSA:   264.66
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Phosphorylation SER 114 A 14.61 - Phosphonate
Binding Affinity
-