PDB Entry (3f97)
PDB ID: 3f97 Resolution: 1.7 Å Exp. Method: X-RAY DIFFRACTION
PMID: 19394314 DOI: 10.1016/j.bcp.2009.04.018
Protein
Protein Name: Platelet-activating factor acetylhydrolase
Uniprot ID/ACC: Q13093 (PAFA_HUMAN) Organism: Homo sapiens (Human)
Gene Symbol: PLA2G7 Gene ID: 7941
Protein Class: HYDROLASE
Ligand
Ligand Name:   Soman
Canonical SMILES:   CC(C)(C)[C@H](C)O[P@@](F)(=O)C
Standard InChI:   InChI=1S/C7H16FO2P/c1-6(7(2,3)4)10-11(5,8)9/h6H,1-5H3/t6-,11-/m0/s1
HET Code:   GD7 PubChem:   12442896
DrugBank:   - ChEMBL:   -
Molecular Formula:   C7H16FO2P Mol. Weight:   182.08719 logP:   3.23
HBD:   0 HBA:   2
#Rotatable Bonds:   2 TPSA:   26.3
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Phosphorylation SER 273 A 13.86 - Phosphonohalogenate
Binding Affinity
-