PDB Entry (6dge) |
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PDB ID: 6dge | Resolution: 1.91 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 29983043 | DOI: 10.1021/acs.biochem.8b00554 | |
Protein |
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Protein Name: N(G),N(G)-dimethylarginine dimethylaminohydrolase 1 | |
Uniprot ID/ACC: O94760 (DDAH1_HUMAN) | Organism: Homo sapiens (Human) |
Gene Symbol: DDAH1 | Gene ID: 23576 |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: N5-(1-imino-2-chloroethyl)-L-lysine | ||
Canonical SMILES: N[C@@H](CCCCNC(=N)CCl)C(O)=O | ||
Standard InChI: InChI=1S/C8H16ClN3O2/c9-5-7(11)12-4-2-1-3-6(10)8(13)14/h6H,1-5,10H2,(H2,11,12)(H,13,14)/t6-/m0/s1 | ||
HET Code: GBG | PubChem: 57279634 | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C8H16ClN3O2 | Mol. Weight: 221.09311 | logP: 0.37427 |
HBD: 4 | HBA: 3 | |
#Rotatable Bonds: 7 | TPSA: 99.2 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Nucleophilic Aliphatic Subsititution | CYS 274 | A | 17.67 | 15.18 | Halomethyl Amidine |
Binding Affinity |
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Database Name | Value |
PDBBind | Ki : 190 nM |