PDB Entry (4y7w)
PDB ID: 4y7w Resolution: 2.5 Å Exp. Method: X-RAY DIFFRACTION
PMID: 26020686 DOI: 10.1021/jacs.5b03688
Protein
Protein Name: Proteasome subunit beta type-2
Uniprot ID/ACC: P25043 (PSB2_YEAST) Organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Gene Symbol: PUP1 Gene ID: 854328
Protein Class: HYDROLASE
Ligand
Ligand Name:   Ac-LAL-ep
Canonical SMILES:   O=C(C)N[C@@H](CC(C)C)C(=O)N[C@@H](C)C(=O)N[C@@H](CC(C)C)C(=O)[C@@]1(C)OC1
Standard InChI:   InChI=1S/C20H35N3O5/c1-11(2)8-15(17(25)20(7)10-28-20)23-18(26)13(5)21-19(27)16(9-12(3)4)22-14(6)24/h11-13,15-16H,8-10H2,1-7H3,(H,21,27)(H,22,24)(H,23,26)/t13-,15-,16-,20-/m0/s1
HET Code:   GAU PubChem:   -
DrugBank:   - ChEMBL:   -
Molecular Formula:   C20H35N3O5 Mol. Weight:   397.25766 logP:   0.9308
HBD:   3 HBA:   5
#Rotatable Bonds:   11 TPSA:   116.9
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Cyclohemiaminoacetalization THR 1 A 67.58 - Epoxide
Binding Affinity
-