PDB Entry (3zvd)
PDB ID: 3zvd Resolution: 2.25 Å Exp. Method: X-RAY DIFFRACTION
PMID: 23388726 DOI: 10.1128/JVI.01123-12
Protein
Protein Name: Genome polyprotein
Uniprot ID/ACC: A1E4A3 (A1E4A3_HED68) Organism: Human enterovirus D68 (EV68) (EV-68)
Gene Symbol: - Gene ID: -
Protein Class: HYDROLASE
Ligand
Ligand Name:   ethyl (2E,4S)-4-[(2S)-2-[(2S)-2-{[(benzyloxy)carbonyl]amino}-4-(tert-butoxy)-4-oxobutanamido]-3-phenylpropanamido]-5-[(3S)-2-oxopyrrolidin-3-yl]pent-2-enoate
Canonical SMILES:   O=C1NCC[C@H]1C[C@@H](/C=C/C(=O)OCC)NC(=O)[C@H](Cc2ccccc2)NC(=O)[C@H](CC(=O)OC(C)(C)C)NC(=O)OCc3ccccc3
Standard InChI:   InChI=1S/C36H46N4O9/c1-5-47-30(41)17-16-27(21-26-18-19-37-32(26)43)38-33(44)28(20-24-12-8-6-9-13-24)39-34(45)29(22-31(42)49-36(2,3)4)40-35(46)48-23-25-14-10-7-11-15-25/h6-17,26-29H,5,18-23H2,1-4H3,(H,37,43)(H,38,44)(H,39,45)(H,40,46)/b17-16+/t26-,27+,28-,29-/m0/s1
HET Code:   G83 PubChem:   -
DrugBank:   - ChEMBL:   -
Molecular Formula:   C36H46N4O9 Mol. Weight:   678.3265 logP:   2.871
HBD:   4 HBA:   9
#Rotatable Bonds:   16 TPSA:   178.23
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Michael Addition CYS 147 A 31.17 15.16 Vinyl Carbonyl
Binding Affinity
-