PDB Entry (2djf) |
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PDB ID: 2djf | Resolution: 2.0 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 17020538 | DOI: 10.1042/BJ20061389 | |
Protein |
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Protein Name: Dipeptidyl peptidase 1 | |
Uniprot ID/ACC: P53634 (CATC_HUMAN) | Organism: Homo sapiens (Human) |
Gene Symbol: CTSC | Gene ID: 1075 |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: N-[(1S)-1-benzyl-3-diazen-1-iumylidene-2-oxopropyl]glycinamide | ||
Canonical SMILES: NCC(=O)N[C@@H](Cc1ccccc1)C(=O)C=[N+]=[N-] | ||
Standard InChI: InChI=1S/C12H14N4O2/c13-7-12(18)16-10(11(17)8-15-14)6-9-4-2-1-3-5-9/h1-5,8,10H,6-7,13H2,(H,16,18)/t10-/m0/s1 | ||
HET Code: 1ZB | PubChem: 101201806 | |
DrugBank: - | ChEMBL: CHEMBL448143 | |
Molecular Formula: C12H14N4O2 | Mol. Weight: 246.11168 | logP: -0.4577 |
HBD: 2 | HBA: 3 | |
#Rotatable Bonds: 6 | TPSA: 108.59 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Nucleophilic Aliphatic Subsititution | CYS 234 | B | 16.71 | 11.59 | Diazomethyl Carbonyl |
Binding Affinity |
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