PDB Entry (2djf)
PDB ID: 2djf Resolution: 2.0 Å Exp. Method: X-RAY DIFFRACTION
PMID: 17020538 DOI: 10.1042/BJ20061389
Protein
Protein Name: Dipeptidyl peptidase 1
Uniprot ID/ACC: P53634 (CATC_HUMAN) Organism: Homo sapiens (Human)
Gene Symbol: CTSC Gene ID: 1075
Protein Class: HYDROLASE
Ligand
Ligand Name:   N-[(1S)-1-benzyl-3-diazen-1-iumylidene-2-oxopropyl]glycinamide
Canonical SMILES:   NCC(=O)N[C@@H](Cc1ccccc1)C(=O)C=[N+]=[N-]
Standard InChI:   InChI=1S/C12H14N4O2/c13-7-12(18)16-10(11(17)8-15-14)6-9-4-2-1-3-5-9/h1-5,8,10H,6-7,13H2,(H,16,18)/t10-/m0/s1
HET Code:   1ZB PubChem:   101201806
DrugBank:   - ChEMBL:   CHEMBL448143
Molecular Formula:   C12H14N4O2 Mol. Weight:   246.11168 logP:   -0.4577
HBD:   2 HBA:   3
#Rotatable Bonds:   6 TPSA:   108.59
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Nucleophilic Aliphatic Subsititution CYS 234 B 16.71 11.59 Diazomethyl Carbonyl
Binding Affinity
-