PDB Entry (4i3w) |
||
| ||
PDB ID: 4i3w | Resolution: 2.24 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 24361046 | DOI: 10.1016/j.chembiol.2013.11.006 | |
Protein |
|
Protein Name: Phosphonoacetaldehyde dehydrogenase | |
Uniprot ID/ACC: Q92UV7 (PHNY_RHIME) | Organism: Rhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium meliloti) |
Gene Symbol: phnY | Gene ID: - |
Protein Class: OXIDOREDUCTASE |
Ligand |
||
Ligand Name: gylceraldehyde-3-phosphate | ||
Canonical SMILES: O[C@H](COP(O)(O)=O)C=O | ||
Standard InChI: InChI=1S/C3H7O6P/c4-1-3(5)2-9-10(6,7)8/h1,3,5H,2H2,(H2,6,7,8)/t3-/m0/s1 | ||
HET Code: G3H | PubChem: 439168 | |
DrugBank: DB02263 | ChEMBL: CHEMBL1232918 | |
Molecular Formula: C3H7O6P | Mol. Weight: 169.99803 | logP: -1.3445 |
HBD: 3 | HBA: 4 | |
#Rotatable Bonds: 4 | TPSA: 104.06 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Hemi(thio)acetalization | CYS 291 | A | 31.27 | 16.08 | Aldehyde |
Binding Affinity |
||
- |