PDB Entry (4i3w)
PDB ID: 4i3w Resolution: 2.24 Å Exp. Method: X-RAY DIFFRACTION
PMID: 24361046 DOI: 10.1016/j.chembiol.2013.11.006
Protein
Protein Name: Phosphonoacetaldehyde dehydrogenase
Uniprot ID/ACC: Q92UV7 (PHNY_RHIME) Organism: Rhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium meliloti)
Gene Symbol: phnY Gene ID: -
Protein Class: OXIDOREDUCTASE
Ligand
Ligand Name:   gylceraldehyde-3-phosphate
Canonical SMILES:   O[C@H](COP(O)(O)=O)C=O
Standard InChI:   InChI=1S/C3H7O6P/c4-1-3(5)2-9-10(6,7)8/h1,3,5H,2H2,(H2,6,7,8)/t3-/m0/s1
HET Code:   G3H PubChem:   439168
DrugBank:   DB02263 ChEMBL:   CHEMBL1232918
Molecular Formula:   C3H7O6P Mol. Weight:   169.99803 logP:   -1.3445
HBD:   3 HBA:   4
#Rotatable Bonds:   4 TPSA:   104.06
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Hemi(thio)acetalization CYS 291 A 31.27 16.08 Aldehyde
Binding Affinity
-