PDB Entry (1uod) |
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PDB ID: 1uod | Resolution: 1.9 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 15476397 | DOI: 10.1021/BI048575M | |
Protein |
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Protein Name: PEP-dependent dihydroxyacetone kinase, dihydroxyacetone-binding subunit DhaK | |
Uniprot ID/ACC: P76015 (DHAK_ECOLI) | Organism: Escherichia coli (strain K12) |
Gene Symbol: dhaK | Gene ID: 57731964 |
Protein Class: TRANSFERASE |
Ligand |
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Ligand Name: dihydroxyacetonephosphate | ||
Canonical SMILES: OCC(=O)COP(O)(O)=O | ||
Standard InChI: InChI=1S/C3H7O6P/c4-1-3(5)2-9-10(6,7)8/h4H,1-2H2,(H2,6,7,8) | ||
HET Code: G3H | PubChem: 668 | |
DrugBank: DB04326 | ChEMBL: CHEMBL1161998 | |
Molecular Formula: C3H7O6P | Mol. Weight: 169.99803 | logP: -1.3429 |
HBD: 3 | HBA: 4 | |
#Rotatable Bonds: 4 | TPSA: 104.06 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Hemiaminalization | HIS 230 | A | 35.9 | 5.49 | Ketone |
Binding Affinity |
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Database Name | Value |
PDBBind | Kd : 780000 nM |