PDB Entry (5vqe)
PDB ID: 5vqe Resolution: 1.89 Å Exp. Method: X-RAY DIFFRACTION
PMID: 29317495 DOI: 10.1074/jbc.RA117.000948
Protein
Protein Name: Beta-glucoside phosphorylase BglX
Uniprot ID/ACC: A0A2R2JFS5 (A0A2R2JFS5_9ZZZZ) Organism: None
Gene Symbol: - Gene ID: -
Protein Class: HYDROLASE
Ligand
Ligand Name:   2-deoxy-2-fluoroglucose
Canonical SMILES:   OC[C@@H]1[C@@H](O)[C@H](O)[C@@H](F)[C@H](O1)O
Standard InChI:   InChI=1S/C6H11FO5/c7-3-5(10)4(9)2(1-8)12-6(3)11/h2-6,8-11H,1H2/t2-,3-,4-,5-,6+/m1/s1
HET Code:   G2F PubChem:   445226
DrugBank:   DB04282 ChEMBL:   CHEMBL1086863
Molecular Formula:   C6H11FO5 Mol. Weight:   182.05905 logP:   -2.2442
HBD:   4 HBA:   5
#Rotatable Bonds:   1 TPSA:   90.15
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Nucleophilic Acyl Substitution ASP 288 A 16.5 8.2 Hemiacetal
Binding Affinity
Database Name Value
PDBBind Kd : 32000000 nM