PDB Entry (4ywb) |
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PDB ID: 4ywb | Resolution: 1.5 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 26322521 | DOI: 10.1021/acs.biochem.5b00822 | |
Protein |
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Protein Name: Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | |
Uniprot ID/ACC: P07379 (PCKGC_RAT) | Organism: Rattus norvegicus (Rat) |
Gene Symbol: Pck1 | Gene ID: 362282 |
Protein Class: LYASE |
Ligand |
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Ligand Name: 3-mercaptopicolinic acid | ||
Canonical SMILES: OC(=O)c1ncccc1S | ||
Standard InChI: InChI=1S/C6H5NO2S/c8-6(9)5-4(10)2-1-3-7-5/h1-3,10H,(H,8,9) | ||
HET Code: 1WD | PubChem: 119070 | |
DrugBank: - | ChEMBL: CHEMBL3247165 | |
Molecular Formula: C6H5NO2S | Mol. Weight: 155.0041 | logP: 1.0685 |
HBD: 2 | HBA: 3 | |
#Rotatable Bonds: 1 | TPSA: 50.19 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Disulfide Formation | CYS 288 | A | 26.17 | 99.99 | Thiol |
Binding Affinity |
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Database Name | Value |
BindingDB | Ki : 121000 nM , Ki : 37000 nM , Ki : 45000 nM , Ki : 180000 nM , Ki : 83000 nM |