PDB Entry (3ptm)
PDB ID: 3ptm Resolution: 2.4 Å Exp. Method: X-RAY DIFFRACTION
PMID: 21521631 DOI: 10.1016/j.abb.2011.04.005
Protein
Protein Name: Beta-glucosidase 12
Uniprot ID/ACC: B8AVF0 (BGL12_ORYSI) Organism: Oryza sativa subsp. indica (Rice)
Gene Symbol: BGLU12 Gene ID: -
Protein Class: HYDROLASE
Ligand
Ligand Name:   2-deoxy-2-fluoroglucose
Canonical SMILES:   OC[C@@H]1[C@@H](O)[C@H](O)[C@@H](F)[C@H](O1)O
Standard InChI:   InChI=1S/C6H11FO5/c7-3-5(10)4(9)2(1-8)12-6(3)11/h2-6,8-11H,1H2/t2-,3-,4-,5-,6+/m1/s1
HET Code:   G2F PubChem:   445226
DrugBank:   DB04282 ChEMBL:   CHEMBL1086863
Molecular Formula:   C6H11FO5 Mol. Weight:   182.05905 logP:   -2.2442
HBD:   4 HBA:   5
#Rotatable Bonds:   1 TPSA:   90.15
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Nucleophilic Acyl Substitution GLU 393 A 11.17 10.15 Hemiacetal
Binding Affinity
-