PDB Entry (6hfv) |
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PDB ID: 6hfv | Resolution: 2.05 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 30194385 | DOI: 10.1038/s41598-018-31316-6 | |
Protein |
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Protein Name: Decaprenylphosphoryl-beta-D-ribose oxidase | |
Uniprot ID/ACC: P9WJF1 (DPRE1_MYCTU) | Organism: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) |
Gene Symbol: dprE1 | Gene ID: 886125 |
Protein Class: OXIDOREDUCTASE |
Ligand |
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Ligand Name: 8-nitro-2-(piperidin-1-yl)-6-(trifluoromethyl)-4H-1,3-benzothiazin-4-one | ||
Canonical SMILES: [O-][N+](=O)c1cc(C(F)(F)F)cc(c12)c(=O)nc(s2)N3CCCCC3 | ||
Standard InChI: InChI=1S/C14H12F3N3O3S/c15-14(16,17)8-6-9-11(10(7-8)20(22)23)24-13(18-12(9)21)19-4-2-1-3-5-19/h6-7H,1-5H2 | ||
HET Code: G1T | PubChem: 67149102 | |
DrugBank: - | ChEMBL: CHEMBL2419032 | |
Molecular Formula: C14H12F3N3O3S | Mol. Weight: 359.05515 | logP: 3.5738 |
HBD: 0 | HBA: 6 | |
#Rotatable Bonds: 2 | TPSA: 76.34 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Nucleophilic Addition to a Double Bond | CYS 387 | B | 27.75 | 10.04 | Nitroarene |
Binding Affinity |
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