PDB Entry (6hf0) |
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PDB ID: 6hf0 | Resolution: 2.38 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 30194385 | DOI: 10.1038/s41598-018-31316-6 | |
Protein |
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Protein Name: Decaprenylphosphoryl-beta-D-ribose oxidase | |
Uniprot ID/ACC: P9WJF1 (DPRE1_MYCTU) | Organism: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) |
Gene Symbol: dprE1 | Gene ID: 886125 |
Protein Class: OXIDOREDUCTASE |
Ligand |
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Ligand Name: 2-[(2~{S},6~{R})-2,6-dimethylpiperidin-1-yl]-8-nitro-6-(trifluoromethyl)-1,3-benzoxazin-4-one | ||
Canonical SMILES: C[C@H]1CCC[C@@H](C)N1c1nc(=O)c2cc(cc([N+]([O-])=O)c2o1)C(F)(F)F | ||
Standard InChI: InChI=1S/C16H16F3N3O4/c1-8-4-3-5-9(2)21(8)15-20-14(23)11-6-10(16(17,18)19)7-12(22(24)25)13(11)26-15/h6-9H,3-5H2,1-2H3/t8-,9+ | ||
HET Code: G1H | PubChem: 137349381 | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C16H16F3N3O4 | Mol. Weight: 371.10928 | logP: 3.8823 |
HBD: 0 | HBA: 6 | |
#Rotatable Bonds: 2 | TPSA: 89.48 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Nucleophilic Addition to a Double Bond | CYS 387 | A | 26.97 | 10.47 | Nitroarene |
Binding Affinity |
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