PDB Entry (6hf0)
PDB ID: 6hf0 Resolution: 2.38 Å Exp. Method: X-RAY DIFFRACTION
PMID: 30194385 DOI: 10.1038/s41598-018-31316-6
Protein
Protein Name: Decaprenylphosphoryl-beta-D-ribose oxidase
Uniprot ID/ACC: P9WJF1 (DPRE1_MYCTU) Organism: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Gene Symbol: dprE1 Gene ID: 886125
Protein Class: OXIDOREDUCTASE
Ligand
Ligand Name:   2-[(2~{S},6~{R})-2,6-dimethylpiperidin-1-yl]-8-nitro-6-(trifluoromethyl)-1,3-benzoxazin-4-one
Canonical SMILES:   C[C@H]1CCC[C@@H](C)N1c1nc(=O)c2cc(cc([N+]([O-])=O)c2o1)C(F)(F)F
Standard InChI:   InChI=1S/C16H16F3N3O4/c1-8-4-3-5-9(2)21(8)15-20-14(23)11-6-10(16(17,18)19)7-12(22(24)25)13(11)26-15/h6-9H,3-5H2,1-2H3/t8-,9+
HET Code:   G1H PubChem:   137349381
DrugBank:   - ChEMBL:   -
Molecular Formula:   C16H16F3N3O4 Mol. Weight:   371.10928 logP:   3.8823
HBD:   0 HBA:   6
#Rotatable Bonds:   2 TPSA:   89.48
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Nucleophilic Addition to a Double Bond CYS 387 A 26.97 10.47 Nitroarene
Binding Affinity
-