PDB Entry (1ree)
PDB ID: 1ree Resolution: 1.6 Å Exp. Method: X-RAY DIFFRACTION
PMID: 8755744 DOI: 10.1021/bi953052n
Protein
Protein Name: Endo-1,4-beta-xylanase 2
Uniprot ID/ACC: P36217 (XYN2_HYPJR) Organism: Hypocrea jecorina (strain ATCC 56765 / BCRC 32924 / NRRL 11460 / Rut C-30) (Trichoderma reesei)
Gene Symbol: xyn2 Gene ID: -
Protein Class: HYDROLASE
Ligand
Ligand Name:   3,4‐epoxybutyl‐beta‐D‐xyloside
Canonical SMILES:   O[C@@H]1CO[C@H]([C@H](O)[C@H]1O)OCC[C@@H]2CO2
Standard InChI:   InChI=1S/C9H16O6/c10-6-4-15-9(8(12)7(6)11)13-2-1-5-3-14-5/h5-12H,1-4H2/t5-,6-,7+,8-,9-/m1/s1
HET Code:   07E PubChem:   5287871
DrugBank:   - ChEMBL:   CHEMBL1231611
Molecular Formula:   C9H16O6 Mol. Weight:   220.09468 logP:   -1.7691
HBD:   3 HBA:   6
#Rotatable Bonds:   4 TPSA:   91.68
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Epoxide Opening GLU 177 B 26.37 9.32 Epoxide
Binding Affinity
-