PDB Entry (2exb) |
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PDB ID: 2exb | Resolution: 1.75 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 16411754 | DOI: 10.1021/bi051533t | |
Protein |
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Protein Name: D-alanyl-D-alanine carboxypeptidase DacB | |
Uniprot ID/ACC: P24228 (DACB_ECOLI) | Organism: Escherichia coli (strain K12) |
Gene Symbol: dacB | Gene ID: 57728546 |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: FLOMOX | ||
Canonical SMILES: Nc1nc(cs1)/C(=C/CC)C(=O)N[C@H](C2=O)[C@H](N23)SCC(COC(=O)N)=C3C(=O)OCOC(=O)C(C)(C)C | ||
Standard InChI: InChI=1S/C23H29N5O8S2/c1-5-6-12(13-9-38-21(24)26-13)16(29)27-14-17(30)28-15(11(7-34-22(25)33)8-37-18(14)28)19(31)35-10-36-20(32)23(2,3)4/h6,9,14,18H,5,7-8,10H2,1-4H3,(H2,24,26)(H2,25,33)(H,27,29)/b12-6-/t14-,18-/m1/s1 | ||
HET Code: FXM | PubChem: 5282438 | |
DrugBank: - | ChEMBL: CHEMBL2431072 | |
Molecular Formula: C23H29N5O8S2 | Mol. Weight: 567.14575 | logP: 1.358 |
HBD: 3 | HBA: 12 | |
#Rotatable Bonds: 9 | TPSA: 193.24 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Beta-Lactam Addition | SER 62 | A | 21.78 | - | Beta-Lactam |
Binding Affinity |
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