PDB Entry (6h5j)
PDB ID: 6h5j Resolution: 1.4 Å Exp. Method: X-RAY DIFFRACTION
PMID: - DOI: 10.1039/c9qo00453j
Protein
Protein Name: 3-dehydroquinate dehydratase
Uniprot ID/ACC: P24670 (AROD_SALTI) Organism: Salmonella typhi
Gene Symbol: aroD Gene ID: -
Protein Class: LYASE
Ligand
Ligand Name:   (1S,3R,4S)-3,4-dihydroxy-5-oxocyclohexane-1-carboxylic acid
Canonical SMILES:   O[C@@H]1C[C@@H](CC(=O)[C@H]1O)C(O)=O
Standard InChI:   InChI=1S/C7H10O5/c8-4-1-3(7(11)12)2-5(9)6(4)10/h3-4,6,8,10H,1-2H2,(H,11,12)/t3-,4+,6-/m0/s1
HET Code:   FT5 PubChem:   89030338
DrugBank:   - ChEMBL:   -
Molecular Formula:   C7H10O5 Mol. Weight:   174.05283 logP:   -1.2281
HBD:   3 HBA:   4
#Rotatable Bonds:   1 TPSA:   94.83
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Hemiaminalization LYS 170 A 15.73 6.45 Ketone
Binding Affinity
-