PDB Entry (6m0k) |
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PDB ID: 6m0k | Resolution: 1.5 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 32321856 | DOI: 10.1126/science.abb4489 | |
Protein |
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Protein Name: Replicase polyprotein 1ab | |
Uniprot ID/ACC: P0DTD1 (R1AB_SARS2) | Organism: Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) (SARS-CoV-2) |
Gene Symbol: rep | Gene ID: 43740578 |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: ~{N}-[(2~{S})-3-(3-fluorophenyl)-1-oxidanylidene-1-[[(2~{S})-1-oxidanylidene-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]propan-2-yl]-1~{H}-indole-2-carboxamide | ||
Canonical SMILES: c1cccc(c12)[nH]c(c2)C(=O)N[C@@H](Cc3cccc(F)c3)C(=O)N[C@H](C=O)C[C@@H]4CCNC4=O | ||
Standard InChI: InChI=1S/C25H25FN4O4/c26-18-6-3-4-15(10-18)11-21(24(33)28-19(14-31)12-17-8-9-27-23(17)32)30-25(34)22-13-16-5-1-2-7-20(16)29-22/h1-7,10,13-14,17,19,21,29H,8-9,11-12H2,(H,27,32)(H,28,33)(H,30,34)/t17-,19-,21-/m0/s1 | ||
HET Code: FJC | PubChem: 146672237 | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C25H25FN4O4 | Mol. Weight: 464.18597 | logP: 1.858 |
HBD: 4 | HBA: 4 | |
#Rotatable Bonds: 9 | TPSA: 120.16 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Hemi(thio)acetalization | CYS 145 | A | 21.43 | 14.35 | Aldehyde |
Binding Affinity |
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