PDB Entry (6m0k)
PDB ID: 6m0k Resolution: 1.5 Å Exp. Method: X-RAY DIFFRACTION
PMID: 32321856 DOI: 10.1126/science.abb4489
Protein
Protein Name: Replicase polyprotein 1ab
Uniprot ID/ACC: P0DTD1 (R1AB_SARS2) Organism: Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) (SARS-CoV-2)
Gene Symbol: rep Gene ID: 43740578
Protein Class: HYDROLASE
Ligand
Ligand Name:   ~{N}-[(2~{S})-3-(3-fluorophenyl)-1-oxidanylidene-1-[[(2~{S})-1-oxidanylidene-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]propan-2-yl]-1~{H}-indole-2-carboxamide
Canonical SMILES:   c1cccc(c12)[nH]c(c2)C(=O)N[C@@H](Cc3cccc(F)c3)C(=O)N[C@H](C=O)C[C@@H]4CCNC4=O
Standard InChI:   InChI=1S/C25H25FN4O4/c26-18-6-3-4-15(10-18)11-21(24(33)28-19(14-31)12-17-8-9-27-23(17)32)30-25(34)22-13-16-5-1-2-7-20(16)29-22/h1-7,10,13-14,17,19,21,29H,8-9,11-12H2,(H,27,32)(H,28,33)(H,30,34)/t17-,19-,21-/m0/s1
HET Code:   FJC PubChem:   146672237
DrugBank:   - ChEMBL:   -
Molecular Formula:   C25H25FN4O4 Mol. Weight:   464.18597 logP:   1.858
HBD:   4 HBA:   4
#Rotatable Bonds:   9 TPSA:   120.16
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Hemi(thio)acetalization CYS 145 A 21.43 14.35 Aldehyde
Binding Affinity
-