PDB Entry (6lze)
PDB ID: 6lze Resolution: 1.5 Å Exp. Method: X-RAY DIFFRACTION
PMID: 32321856 DOI: 10.1126/science.abb4489
Protein
Protein Name: Replicase polyprotein 1ab
Uniprot ID/ACC: P0DTD1 (R1AB_SARS2) Organism: Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) (SARS-CoV-2)
Gene Symbol: rep Gene ID: 43740578
Protein Class: HYDROLASE
Ligand
Ligand Name:   ~{N}-[(2~{S})-3-cyclohexyl-1-oxidanylidene-1-[[(2~{S})-1-oxidanylidene-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]propan-2-yl]-1~{H}-indole-2-carboxamide
Canonical SMILES:   c1cccc(c12)[nH]c(c2)C(=O)N[C@@H](CC3CCCCC3)C(=O)N[C@H](C=O)C[C@@H]4CCNC4=O
Standard InChI:   InChI=1S/C25H32N4O4/c30-15-19(13-18-10-11-26-23(18)31)27-24(32)21(12-16-6-2-1-3-7-16)29-25(33)22-14-17-8-4-5-9-20(17)28-22/h4-5,8-9,14-16,18-19,21,28H,1-3,6-7,10-13H2,(H,26,31)(H,27,32)(H,29,33)/t18-,19-,21-/m0/s1
HET Code:   FHR PubChem:   145343771
DrugBank:   - ChEMBL:   -
Molecular Formula:   C25H32N4O4 Mol. Weight:   452.24237 logP:   2.4466
HBD:   4 HBA:   4
#Rotatable Bonds:   9 TPSA:   120.16
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Hemi(thio)acetalization CYS 145 A 21.98 14.33 Aldehyde
Binding Affinity
-