PDB Entry (6lze) |
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PDB ID: 6lze | Resolution: 1.5 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 32321856 | DOI: 10.1126/science.abb4489 | |
Protein |
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Protein Name: Replicase polyprotein 1ab | |
Uniprot ID/ACC: P0DTD1 (R1AB_SARS2) | Organism: Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) (SARS-CoV-2) |
Gene Symbol: rep | Gene ID: 43740578 |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: ~{N}-[(2~{S})-3-cyclohexyl-1-oxidanylidene-1-[[(2~{S})-1-oxidanylidene-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]propan-2-yl]-1~{H}-indole-2-carboxamide | ||
Canonical SMILES: c1cccc(c12)[nH]c(c2)C(=O)N[C@@H](CC3CCCCC3)C(=O)N[C@H](C=O)C[C@@H]4CCNC4=O | ||
Standard InChI: InChI=1S/C25H32N4O4/c30-15-19(13-18-10-11-26-23(18)31)27-24(32)21(12-16-6-2-1-3-7-16)29-25(33)22-14-17-8-4-5-9-20(17)28-22/h4-5,8-9,14-16,18-19,21,28H,1-3,6-7,10-13H2,(H,26,31)(H,27,32)(H,29,33)/t18-,19-,21-/m0/s1 | ||
HET Code: FHR | PubChem: 145343771 | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C25H32N4O4 | Mol. Weight: 452.24237 | logP: 2.4466 |
HBD: 4 | HBA: 4 | |
#Rotatable Bonds: 9 | TPSA: 120.16 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Hemi(thio)acetalization | CYS 145 | A | 21.98 | 14.33 | Aldehyde |
Binding Affinity |
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