PDB Entry (6gzy) |
||
| ||
PDB ID: 6gzy | Resolution: 2.15 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 30657686 | DOI: 10.1021/jacs.8b13193 | |
Protein |
|
Protein Name: E3 ubiquitin-protein ligase RNF31 | |
Uniprot ID/ACC: Q96EP0 (RNF31_HUMAN) | Organism: Homo sapiens (Human) |
Gene Symbol: RNF31 | Gene ID: 55072 |
Protein Class: LIGASE |
Ligand |
||
Ligand Name: methyl (2E)‐4‐({2‐oxo‐1H,5H,6H,7H‐cyclopenta[b]pyridin‐3‐yl}formamido)but‐2‐enoate | ||
Canonical SMILES: COC(=O)/C=C/CNC(=O)c(c(=O)[nH]1)cc(c12)CCC2 | ||
Standard InChI: InChI=1S/C14H16N2O4/c1-20-12(17)6-3-7-15-13(18)10-8-9-4-2-5-11(9)16-14(10)19/h3,6,8H,2,4-5,7H2,1H3,(H,15,18)(H,16,19)/b6-3+ | ||
HET Code: FHH | PubChem: - | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C14H16N2O4 | Mol. Weight: 276.111 | logP: 0.3226 |
HBD: 2 | HBA: 4 | |
#Rotatable Bonds: 4 | TPSA: 88.26 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Michael Addition | CYS 885 | A | 88.11 | 10.7 | Vinyl Carbonyl |
Binding Affinity |
||
- |