PDB Entry (6gzy)
PDB ID: 6gzy Resolution: 2.15 Å Exp. Method: X-RAY DIFFRACTION
PMID: 30657686 DOI: 10.1021/jacs.8b13193
Protein
Protein Name: E3 ubiquitin-protein ligase RNF31
Uniprot ID/ACC: Q96EP0 (RNF31_HUMAN) Organism: Homo sapiens (Human)
Gene Symbol: RNF31 Gene ID: 55072
Protein Class: LIGASE
Ligand
Ligand Name:   methyl (2E)‐4‐({2‐oxo‐1H,5H,6H,7H‐cyclopenta[b]pyridin‐3‐yl}formamido)but‐2‐enoate
Canonical SMILES:   COC(=O)/C=C/CNC(=O)c(c(=O)[nH]1)cc(c12)CCC2
Standard InChI:   InChI=1S/C14H16N2O4/c1-20-12(17)6-3-7-15-13(18)10-8-9-4-2-5-11(9)16-14(10)19/h3,6,8H,2,4-5,7H2,1H3,(H,15,18)(H,16,19)/b6-3+
HET Code:   FHH PubChem:   -
DrugBank:   - ChEMBL:   -
Molecular Formula:   C14H16N2O4 Mol. Weight:   276.111 logP:   0.3226
HBD:   2 HBA:   4
#Rotatable Bonds:   4 TPSA:   88.26
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Michael Addition CYS 885 A 88.11 10.7 Vinyl Carbonyl
Binding Affinity
-