PDB Entry (2xvk)
PDB ID: 2xvk Resolution: 2.5 Å Exp. Method: X-RAY DIFFRACTION
PMID: 21426303 DOI: 10.1042/BJ20110299
Protein
Protein Name: Alpha-xylosidase, putative, xyl31A
Uniprot ID/ACC: B3PBD9 (B3PBD9_CELJU) Organism: Cellvibrio japonicus (strain Ueda107) (Pseudomonas fluorescens subsp. cellulosa)
Gene Symbol: xyl31A Gene ID: -
Protein Class: HYDROLASE
Ligand
Ligand Name:   5-fluoro-alpha-D-xylopyranosyl fluoride
Canonical SMILES:   O[C@H]1[C@H](O)[C@H](F)O[C@H](F)[C@@H]1O
Standard InChI:   InChI=1S/C5H8F2O4/c6-4-2(9)1(8)3(10)5(7)11-4/h1-5,8-10H/t1-,2-,3+,4+,5-
HET Code:   FFX PubChem:   101964863
DrugBank:   - ChEMBL:   -
Molecular Formula:   C5H8F2O4 Mol. Weight:   170.03906 logP:   -1.3095
HBD:   3 HBA:   4
#Rotatable Bonds:   0 TPSA:   69.92
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Nucleophilic Acyl Substitution ASP 582 A 12.99 7.72 Alkyl Halide
Binding Affinity
-