PDB Entry (2xvk) |
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PDB ID: 2xvk | Resolution: 2.5 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 21426303 | DOI: 10.1042/BJ20110299 | |
Protein |
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Protein Name: Alpha-xylosidase, putative, xyl31A | |
Uniprot ID/ACC: B3PBD9 (B3PBD9_CELJU) | Organism: Cellvibrio japonicus (strain Ueda107) (Pseudomonas fluorescens subsp. cellulosa) |
Gene Symbol: xyl31A | Gene ID: - |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: 5-fluoro-alpha-D-xylopyranosyl fluoride | ||
Canonical SMILES: O[C@H]1[C@H](O)[C@H](F)O[C@H](F)[C@@H]1O | ||
Standard InChI: InChI=1S/C5H8F2O4/c6-4-2(9)1(8)3(10)5(7)11-4/h1-5,8-10H/t1-,2-,3+,4+,5- | ||
HET Code: FFX | PubChem: 101964863 | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C5H8F2O4 | Mol. Weight: 170.03906 | logP: -1.3095 |
HBD: 3 | HBA: 4 | |
#Rotatable Bonds: 0 | TPSA: 69.92 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Nucleophilic Acyl Substitution | ASP 582 | A | 12.99 | 7.72 | Alkyl Halide |
Binding Affinity |
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