PDB Entry (6gwg) |
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PDB ID: 6gwg | Resolution: 1.77 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 30104598 | DOI: 10.1038/s41467-018-05702-7 | |
Protein |
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Protein Name: Alpha-galactosidase | |
Uniprot ID/ACC: G4FEF4 (AGAL_THEMA) | Organism: Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8) |
Gene Symbol: galA | Gene ID: - |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: (1S,2S,3S)-6-[(2,4-dinitrophenoxy)methyl]-3-fluorocyclohex-5-ene-1,2,4-triol | ||
Canonical SMILES: F[C@@H]1[C@@H](O)[C@@H](O)C(=C[C@@H]1O)COc2ccc([N+]([O-])=O)cc2[N+]([O-])=O | ||
Standard InChI: InChI=1S/C13H13FN2O8/c14-11-9(17)3-6(12(18)13(11)19)5-24-10-2-1-7(15(20)21)4-8(10)16(22)23/h1-4,9,11-13,17-19H,5H2/t9-,11-,12-,13+/m0/s1 | ||
HET Code: FEK | PubChem: - | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C13H13FN2O8 | Mol. Weight: 344.06558 | logP: 0.2426 |
HBD: 3 | HBA: 8 | |
#Rotatable Bonds: 5 | TPSA: 156.2 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Nucleophilic Acyl Substitution | ASP 327 | A | 14.24 | 8.18 | Allyl Vinyl Ether |
Binding Affinity |
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