PDB Entry (6gwg)
PDB ID: 6gwg Resolution: 1.77 Å Exp. Method: X-RAY DIFFRACTION
PMID: 30104598 DOI: 10.1038/s41467-018-05702-7
Protein
Protein Name: Alpha-galactosidase
Uniprot ID/ACC: G4FEF4 (AGAL_THEMA) Organism: Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)
Gene Symbol: galA Gene ID: -
Protein Class: HYDROLASE
Ligand
Ligand Name:   (1S,2S,3S)-6-[(2,4-dinitrophenoxy)methyl]-3-fluorocyclohex-5-ene-1,2,4-triol
Canonical SMILES:   F[C@@H]1[C@@H](O)[C@@H](O)C(=C[C@@H]1O)COc2ccc([N+]([O-])=O)cc2[N+]([O-])=O
Standard InChI:   InChI=1S/C13H13FN2O8/c14-11-9(17)3-6(12(18)13(11)19)5-24-10-2-1-7(15(20)21)4-8(10)16(22)23/h1-4,9,11-13,17-19H,5H2/t9-,11-,12-,13+/m0/s1
HET Code:   FEK PubChem:   -
DrugBank:   - ChEMBL:   -
Molecular Formula:   C13H13FN2O8 Mol. Weight:   344.06558 logP:   0.2426
HBD:   3 HBA:   8
#Rotatable Bonds:   5 TPSA:   156.2
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Nucleophilic Acyl Substitution ASP 327 A 14.24 8.18 Allyl Vinyl Ether
Binding Affinity
-