PDB Entry (3v4x)
PDB ID: 3v4x Resolution: 1.95 Å Exp. Method: X-RAY DIFFRACTION
PMID: 22510038 DOI: 10.1021/bi300037k
Protein
Protein Name: Hydroxymethylglutaryl-CoA synthase
Uniprot ID/ACC: Q9FD71 (HMGCS_ENTFL) Organism: Enterococcus faecalis (Streptococcus faecalis)
Gene Symbol: mvaS Gene ID: 58344106
Protein Class: TRANSFERASE
Ligand
Ligand Name:   Hymeglusin
Canonical SMILES:   C[C@H](CCCC[C@H]1OC(=O)[C@@H]1CO)C\C(C)=C\C(\C)=C\C(O)=O
Standard InChI:   InChI=1S/C18H28O5/c1-12(8-13(2)9-14(3)10-17(20)21)6-4-5-7-16-15(11-19)18(22)23-16/h9-10,12,15-16,19H,4-8,11H2,1-3H3,(H,20,21)/b13-9+,14-10+/t12-,15-,16-/m1/s1
HET Code:   F24 PubChem:   6440895
DrugBank:   - ChEMBL:   CHEMBL470269
Molecular Formula:   C18H28O5 Mol. Weight:   324.19366 logP:   3.0841
HBD:   2 HBA:   4
#Rotatable Bonds:   10 TPSA:   83.83
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Lactone Addition CYS 111 A 12.71 18.85 Beta-Lactone
Binding Affinity
Database Name Value
PDBBind Ki : 700 nM