PDB Entry (6gjk) |
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PDB ID: 6gjk | Resolution: 1.47 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 30611847 | DOI: 10.1016/j.bbagen.2019.01.001 | |
Protein |
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Protein Name: Histone deacetylase-like amidohydrolase | |
Uniprot ID/ACC: Q70I53 (HDAH_ALCSD) | Organism: Alcaligenes sp. (strain DSM 11172) (Bordetella sp. (strain FB188)) |
Gene Symbol: hdaH | Gene ID: - |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: 2-(1,4,5,6-tetrahydropyrimidin-2-yl)benzenethiol | ||
Canonical SMILES: Sc1ccccc1C1=NCCCN1 | ||
Standard InChI: InChI=1S/C10H12N2S/c13-9-5-2-1-4-8(9)10-11-6-3-7-12-10/h1-2,4-5,13H,3,6-7H2,(H,11,12) | ||
HET Code: F0Z | PubChem: 2776794 | |
DrugBank: - | ChEMBL: CHEMBL3974304 | |
Molecular Formula: C10H12N2S | Mol. Weight: 192.07211 | logP: 1.7152 |
HBD: 2 | HBA: 3 | |
#Rotatable Bonds: 1 | TPSA: 24.39 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Disulfide Formation | CYS 51 | A | 28.83 | 99.99 | Thiol |
Binding Affinity |
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