PDB Entry (6gjk)
PDB ID: 6gjk Resolution: 1.47 Å Exp. Method: X-RAY DIFFRACTION
PMID: 30611847 DOI: 10.1016/j.bbagen.2019.01.001
Protein
Protein Name: Histone deacetylase-like amidohydrolase
Uniprot ID/ACC: Q70I53 (HDAH_ALCSD) Organism: Alcaligenes sp. (strain DSM 11172) (Bordetella sp. (strain FB188))
Gene Symbol: hdaH Gene ID: -
Protein Class: HYDROLASE
Ligand
Ligand Name:   2-(1,4,5,6-tetrahydropyrimidin-2-yl)benzenethiol
Canonical SMILES:   Sc1ccccc1C1=NCCCN1
Standard InChI:   InChI=1S/C10H12N2S/c13-9-5-2-1-4-8(9)10-11-6-3-7-12-10/h1-2,4-5,13H,3,6-7H2,(H,11,12)
HET Code:   F0Z PubChem:   2776794
DrugBank:   - ChEMBL:   CHEMBL3974304
Molecular Formula:   C10H12N2S Mol. Weight:   192.07211 logP:   1.7152
HBD:   2 HBA:   3
#Rotatable Bonds:   1 TPSA:   24.39
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Disulfide Formation CYS 51 A 28.83 99.99 Thiol
Binding Affinity
-