PDB Entry (3gzj)
PDB ID: 3gzj Resolution: 2.19 Å Exp. Method: X-RAY DIFFRACTION
PMID: 19496101 DOI: 10.1002/anie.200900150
Protein
Protein Name: Polyneuridine-aldehyde esterase
Uniprot ID/ACC: Q9SE93 (PNAE_RAUSE) Organism: Rauvolfia serpentina (Serpentine wood) (Ophioxylon serpentinum)
Gene Symbol: PNAE Gene ID: -
Protein Class: HYDROLASE
Ligand
Ligand Name:   16-epi-Vellosimine
Canonical SMILES:   C/C=C([C@@H]12)/CN3[C@@H](C2)c4c(C[C@H]3[C@H]1C=O)c5c([nH]4)cccc5
Standard InChI:   InChI=1S/C19H20N2O/c1-2-11-9-21-17-8-14-12-5-3-4-6-16(12)20-19(14)18(21)7-13(11)15(17)10-22/h2-6,10,13,15,17-18,20H,7-9H2,1H3/b11-2-/t13-,15-,17-,18-/m0/s1
HET Code:   EVS PubChem:   11335328
DrugBank:   - ChEMBL:   CHEMBL1232599
Molecular Formula:   C19H20N2O Mol. Weight:   292.15756 logP:   3.2306
HBD:   1 HBA:   2
#Rotatable Bonds:   1 TPSA:   36.1
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Hemi(thio)acetalization SER 87 A 42.61 - Aldehyde
Binding Affinity
-