PDB Entry (6g83)
PDB ID: 6g83 Resolution: 2.4 Å Exp. Method: X-RAY DIFFRACTION
PMID: 30012754 DOI: 10.1128/AAC.00681-18
Protein
Protein Name: Decaprenylphosphoryl-beta-D-ribose oxidase
Uniprot ID/ACC: P9WJF0 (DPRE1_MYCTO) Organism: Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
Gene Symbol: dprE1 Gene ID: -
Protein Class: OXIDOREDUCTASE
Ligand
Ligand Name:   sPBTZ169
Canonical SMILES:   [O-][N+](=O)c1cc(cc2c1sc(nc2=O)N1CCN(CC1)S(=O)(=O)C1CCCCC1)C(F)(F)F
Standard InChI:   InChI=1S/C19H21F3N4O5S2/c20-19(21,22)12-10-14-16(15(11-12)26(28)29)32-18(23-17(14)27)24-6-8-25(9-7-24)33(30,31)13-4-2-1-3-5-13/h10-11,13H,1-9H2
HET Code:   EQ8 PubChem:   146001133
DrugBank:   - ChEMBL:   -
Molecular Formula:   C19H21F3N4O5S2 Mol. Weight:   506.09055 logP:   3.368
HBD:   0 HBA:   8
#Rotatable Bonds:   4 TPSA:   113.72
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Nucleophilic Addition to a Double Bond CYS 387 A 22.84 9.72 Nitroarene
Binding Affinity
-