PDB Entry (2sam) |
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PDB ID: 2sam | Resolution: 2.4 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 8241141 | DOI: 10.1021/bi00097a030 | |
Protein |
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Protein Name: Exoribonuclease H | |
Uniprot ID/ACC: Q5QGH9 (Q5QGH9_SIV) | Organism: Simian immunodeficiency virus (SIV) |
Gene Symbol: pol | Gene ID: - |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: 1,2-epoxy-3-(p-nitrophenoxy)propane | ||
Canonical SMILES: [O-][N+](=O)c1ccc(cc1)OC[C@H]2CO2 | ||
Standard InChI: InChI=1S/C9H9NO4/c11-10(12)7-1-3-8(4-2-7)13-5-9-6-14-9/h1-4,9H,5-6H2/t9-/m0/s1 | ||
HET Code: EPN | PubChem: 147858 | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C9H9NO4 | Mol. Weight: 195.05316 | logP: 1.3724 |
HBD: 0 | HBA: 4 | |
#Rotatable Bonds: 4 | TPSA: 64.9 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Epoxide Opening | ASP 25 | A | 43.27 | 4.65 | Epoxide |
Binding Affinity |
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