PDB Entry (6g58)
PDB ID: 6g58 Resolution: 1.9 Å Exp. Method: X-RAY DIFFRACTION
PMID: 30297752 DOI: 10.1038/s41557-018-0144-2
Protein
Protein Name: Alanine racemase 1
Uniprot ID/ACC: P63479 (ALR1_STAAM) Organism: Staphylococcus aureus (strain Mu50 / ATCC 700699)
Gene Symbol: alr1 Gene ID: -
Protein Class: ISOMERASE
Ligand
Ligand Name:   {[6-(but-3-yn-1-yl)-4-formyl-5-hydroxypyridin-3-yl]methoxy}phosphonic acid
Canonical SMILES:   Oc1c(CCC#C)ncc(COP(O)(O)=O)c1C=O
Standard InChI:   InChI=1S/C11H12NO6P/c1-2-3-4-10-11(14)9(6-13)8(5-12-10)7-18-19(15,16)17/h1,5-6,14H,3-4,7H2,(H2,15,16,17)
HET Code:   EOW PubChem:   -
DrugBank:   - ChEMBL:   -
Molecular Formula:   C11H12NO6P Mol. Weight:   285.04022 logP:   0.7748
HBD:   3 HBA:   5
#Rotatable Bonds:   6 TPSA:   116.95
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Imine Condensation LYS 39 A 28.66 9.63 Aldehyde
Binding Affinity
-