PDB Entry (6g58) |
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PDB ID: 6g58 | Resolution: 1.9 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 30297752 | DOI: 10.1038/s41557-018-0144-2 | |
Protein |
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Protein Name: Alanine racemase 1 | |
Uniprot ID/ACC: P63479 (ALR1_STAAM) | Organism: Staphylococcus aureus (strain Mu50 / ATCC 700699) |
Gene Symbol: alr1 | Gene ID: - |
Protein Class: ISOMERASE |
Ligand |
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Ligand Name: {[6-(but-3-yn-1-yl)-4-formyl-5-hydroxypyridin-3-yl]methoxy}phosphonic acid | ||
Canonical SMILES: Oc1c(CCC#C)ncc(COP(O)(O)=O)c1C=O | ||
Standard InChI: InChI=1S/C11H12NO6P/c1-2-3-4-10-11(14)9(6-13)8(5-12-10)7-18-19(15,16)17/h1,5-6,14H,3-4,7H2,(H2,15,16,17) | ||
HET Code: EOW | PubChem: - | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C11H12NO6P | Mol. Weight: 285.04022 | logP: 0.7748 |
HBD: 3 | HBA: 5 | |
#Rotatable Bonds: 6 | TPSA: 116.95 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Imine Condensation | LYS 39 | A | 28.66 | 9.63 | Aldehyde |
Binding Affinity |
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