PDB Entry (2y2o)
PDB ID: 2y2o Resolution: 1.88 Å Exp. Method: X-RAY DIFFRACTION
PMID: 21732689 DOI: 10.1021/CB2001846
Protein
Protein Name: DD-transpeptidase
Uniprot ID/ACC: Q7CRA4 (Q7CRA4_STRR6) Organism: Streptococcus pneumoniae (strain ATCC BAA-255 / R6)
Gene Symbol: pbp1b Gene ID: -
Protein Class: TRANSFERASE
Ligand
Ligand Name:   [(1S)-1-[(2,6-difluorophenyl)formamido]ethyl]boronic acid
Canonical SMILES:   OB(O)[C@@H](C)NC(=O)c1c(F)cccc1F
Standard InChI:   InChI=1S/C9H10BF2NO3/c1-5(10(15)16)13-9(14)8-6(11)3-2-4-7(8)12/h2-5,15-16H,1H3,(H,13,14)/t5-/m1/s1
HET Code:   EO9 PubChem:   53322678
DrugBank:   - ChEMBL:   CHEMBL1672823
Molecular Formula:   C9H10BF2NO3 Mol. Weight:   229.07217 logP:   0.0951
HBD:   3 HBA:   3
#Rotatable Bonds:   3 TPSA:   69.56
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Borylation SER 460 A 12.21 - Boronic Acid
Binding Affinity
-