PDB Entry (6g59)
PDB ID: 6g59 Resolution: 2.45 Å Exp. Method: X-RAY DIFFRACTION
PMID: 30297752 DOI: 10.1038/s41557-018-0144-2
Protein
Protein Name: Alanine racemase 1
Uniprot ID/ACC: P63479 (ALR1_STAAM) Organism: Staphylococcus aureus (strain Mu50 / ATCC 700699)
Gene Symbol: alr1 Gene ID: -
Protein Class: ISOMERASE
Ligand
Ligand Name:   (6-ethynyl-4-methanoyl-5-oxidanyl-pyridin-3-yl)methyl dihydrogen phosphate
Canonical SMILES:   Oc1c(C=O)c(COP(O)(O)=O)cnc1C#C
Standard InChI:   InChI=1S/C9H8NO6P/c1-2-8-9(12)7(4-11)6(3-10-8)5-16-17(13,14)15/h1,3-4,12H,5H2,(H2,13,14,15)
HET Code:   EM2 PubChem:   -
DrugBank:   - ChEMBL:   -
Molecular Formula:   C9H8NO6P Mol. Weight:   257.0089 logP:   0.1903
HBD:   3 HBA:   5
#Rotatable Bonds:   4 TPSA:   116.95
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Imine Condensation LYS 39 A 26.57 9.65 Aldehyde
Binding Affinity
-