PDB Entry (6g3z)
PDB ID: 6g3z Resolution: 2.35 Å Exp. Method: X-RAY DIFFRACTION
PMID: 29812914 DOI: 10.1021/acs.biochem.8b00535
Protein
Protein Name: 2-dehydro-3-deoxy-phosphogluconate/2-dehydro-3-deoxy-6-phosphogalactonate aldolase
Uniprot ID/ACC: O54288 (KDGA_SACSO) Organism: Saccharolobus solfataricus (Sulfolobus solfataricus)
Gene Symbol: - Gene ID: 44128913
Protein Class: LYASE
Ligand
Ligand Name:   2-keto-3-deoxy-6-phosphogluconate
Canonical SMILES:   O[C@H](COP(O)(O)=O)[C@@H](O)CC(=O)C(O)=O
Standard InChI:   InChI=1S/C6H11O9P/c7-3(1-4(8)6(10)11)5(9)2-15-16(12,13)14/h3,5,7,9H,1-2H2,(H,10,11)(H2,12,13,14)/t3-,5+/m0/s1
HET Code:   ELE PubChem:   3080745
DrugBank:   - ChEMBL:   CHEMBL1162150
Molecular Formula:   C6H11O9P Mol. Weight:   258.01407 logP:   -2.1387
HBD:   5 HBA:   6
#Rotatable Bonds:   7 TPSA:   161.59
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Imine Condensation LYS 155 A 15.33 6.87 Ketone
Binding Affinity
-