PDB Entry (6lka)
PDB ID: 6lka Resolution: 2.03 Å Exp. Method: X-RAY DIFFRACTION
PMID: 32503695 DOI: 10.1016/j.bmc.2020.115551
Protein
Protein Name: Genome polyprotein
Uniprot ID/ACC: A9XG43 (A9XG43_HE71) Organism: Human enterovirus 71 (EV71) (EV-71)
Gene Symbol: - Gene ID: -
Protein Class: HYDROLASE
Ligand
Ligand Name:   (2S)-N-[(2S,3S,6S,7Z,12E)-4,9-dioxo-6-{[(3S)-2-oxopyrrolidin-3-yl]methyl}-2-phenyl-1,10-dioxa-5-azacyclopentadeca-7,12-dien-3-yl]-3-methyl-2-[(5-methyl-1,2-oxazol-3-yl)formamido]butanamide
Canonical SMILES:   Cc1onc(c1)C(=O)N[C@@H](C(C)C)C(=O)N[C@H]2[C@H](c3ccccc3)OCC/C=C/COC(=O)/C=C\[C@@H](NC2=O)C[C@@H]4CCNC4=O
Standard InChI:   InChI=1S/C33H41N5O8/c1-20(2)27(36-31(41)25-18-21(3)46-38-25)32(42)37-28-29(22-10-6-4-7-11-22)45-17-9-5-8-16-44-26(39)13-12-24(35-33(28)43)19-23-14-15-34-30(23)40/h4-8,10-13,18,20,23-24,27-29H,9,14-17,19H2,1-3H3,(H,34,40)(H,35,43)(H,36,41)(H,37,42)/b8-5+,13-12-/t23-,24+,27-,28-,29-/m0/s1
HET Code:   EGF PubChem:   -
DrugBank:   - ChEMBL:   -
Molecular Formula:   C33H41N5O8 Mol. Weight:   635.29553 logP:   2.05042
HBD:   4 HBA:   9
#Rotatable Bonds:   8 TPSA:   177.96
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Michael Addition CYS 147 A 17.89 15.1 Vinyl Carbonyl
Binding Affinity
-